261065 GAF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261065 chr_1 GAF 2110995 2113366 + GAF

Synonyms

NCBI ID Ensembl Genomes exon ID
7445486 Thaps261065.1, Thaps261065.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317

Most Highly Correlated Transcripts

32430

DUF1336 superfamily
0.8619

4295

hypothetical protein
0.858

37497

cysE
0.8486

41106

cell cycle control protein cwf4
0.8475

24525

hypothetical protein
0.8472

37758

hypothetical protein
0.8461

24776

LRR_RI superfamily
0.8448

261278

GRX_GRXh_1_2_like
0.8428

31069

S_TKc
0.837

268358

hypothetical protein
0.8363

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GAF GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... cl17456 77.2387 2.15E-16 626 - 765 specific 250726
GAF superfamily GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... - 77.2387 2.15E-16 626 - 765 superfamily 266697
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 62.4318 8.57E-11 104 - 408 superfamily 260426

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre17.g739250.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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