261112 Nudix_Hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261112 chr_1 Nudix_Hydrolase superfamily 2493335 2493945 - Nudix_Hydrolase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447642 Thaps261112.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0054

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0051
 0.39

Most Highly Correlated Transcripts

37118

FeThRed_B
0.9066

1773

hypothetical protein
0.9013

261878

TIGR00054
0.8953

3693

SWIB
0.8938

35136

NA
0.8935

30701

PRK05279
0.8913

41655

Chloroa_b-bind
0.8905

24758

hypothetical protein
0.8898

10898

hypothetical protein
0.8895

7643

(NPS1) PLN02921
0.8884

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nudix_Hydrolase superfamily Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes... - 114.995 3.11E-32 49 - 203 superfamily 260427

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT1G30110.2 Not available

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0004452 GO:0008299 -

GO:0004452

isopentenyl-diphosphate delta-isomerase activity

Details: 
Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate.
GO Category: 
MF

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

Add comment

Log in to post comments