261283 SmpB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261283 chr_2 SmpB 573520 574329 - SmpB

Synonyms

NCBI ID Ensembl Genomes exon ID
7446482 Thaps261283.1, Thaps261283.3, Thaps261283.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0116

Most Highly Correlated Transcripts

bd737

(bd737) NA
0.9063

37934

GRX_PICOT_like
0.9017

bd643

(bd643) NA
0.9001

9115

DnaJ
0.8977

bd690

(bd690) NA
0.8925

41655

Chloroa_b-bind
0.8917

2621

hypothetical protein
0.8903

263361

CHD
0.8903

30701

PRK05279
0.8876

bd738

(bd738) NA
0.8825

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SmpB Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing... cl00482 153.66 2.00E-47 65 - 185 specific 187755
SmpB superfamily Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing... - 153.66 2.00E-47 65 - 185 superfamily 260454

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16021 PHATRDRAFT_16021 226675 309445 47186 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006412 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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