261325 ARMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261325	chr_2	ARM	774862	781536	-	ARM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450216	Thaps261325.3, Thaps261325.2, Thaps261325.1, Thaps261325.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0320

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0097	0.39	0.37 0.009

Most Highly Correlated Transcripts

24216 hypothetical protein 0.8987	33726 STKc_CDK9_like 0.8858	8255 WD40 superfamily 0.8828	4108 hypothetical protein 0.8786	24990 hypothetical protein 0.876	5694 hypothetical protein 0.8739
24562 hypothetical protein 0.8719	3719 DECH_helic 0.8719	19360 HELICc 0.8631	1268 hypothetical protein 0.8619

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ARM superfamily		Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence...	-	61.5615	9.94E-11	1454 - 1562	superfamily	237987
ARM superfamily		Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence...	-	61.5615	9.94E-11	1454 - 1562	superfamily	237987

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	314947

KEGG

KEGG description	KEGG Pathway
Regulation of autophagy	map04140

GO Terms

Not available -

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