261527 RagA_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261527 chr_2 RagA_like 1985295 1986805 + RagA_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7452489 Thaps261527.3, Thaps261527.2, Thaps261527.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0053

Most Highly Correlated Transcripts

9514

hypothetical protein
0.914

8376

hypothetical protein
0.9136

264347

NDUFA9_like_SDR_a
0.9095

3378

DUF775 superfamily
0.9034

13448

Sec1
0.9028

23169

hypothetical protein
0.9012

261863

GlcNAc superfamily
0.9008

36988

UBQ superfamily
0.9004

5631

(APS4) APS2
0.9002

1244

hypothetical protein
0.9

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RagA_like Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B;... cl17170 474.393 5.93E-169 5 - 315 specific 206744
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 474.393 5.93E-169 5 - 315 superfamily 266525
Gtr1_RagA Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a suppressor of... - 308.373 1.40E-104 5 - 249 multi-dom 252733

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_21147 PHATR_21147 207801 217220 371787 Not available Not available 354319

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0005737 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

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