261541 RRM3_CELF1-6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261541 chr_2 RRM3_CELF1-6 2058524 2060511 - RRM3_CELF1-6

Synonyms

NCBI ID Ensembl Genomes exon ID
7452352 Thaps261541.2, Thaps261541.3, Thaps261541.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0094

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0043
 0.36

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9192

34403

KISc_KIF2_like
0.889

2613

hypothetical protein
0.8809

23012

hypothetical protein
0.8769

37123

(VAT2) V-ATPase_V1_A
0.8722

11377

hypothetical protein
0.8687

20931

hypothetical protein
0.8686

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8599

36137

BIM1
0.8532

9822

hypothetical protein
0.8523

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_CELF1-6 RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3,... cl17169 134.687 4.01E-38 389 - 461 specific 240808
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 117.648 6.76E-32 111 - 187 superfamily 266524
RRM1_2_CELF1-6_like RNA recognition motif 1 and 2 in CELF/Bruno-like family of RNA binding proteins and plant flowering... cl17169 117.648 6.76E-32 111 - 187 specific 240807
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 117.648 6.76E-32 111 - 187 superfamily 266524
RRM1_2_CELF1-6_like RNA recognition motif 1 and 2 in CELF/Bruno-like family of RNA binding proteins and plant flowering... cl17169 117.648 6.76E-32 111 - 187 specific 240807
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 117.648 6.76E-32 111 - 187 superfamily 266524
ELAV_HUD_SF ELAV/HuD family splicing factor; This model describes the ELAV/HuD subfamily of splicing factors... - 140.076 5.32E-37 112 - 463 multi-dom 233516

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42828 PHATRDRAFT_42828 215257 179721 71934 Cre03.g177200.t1.2 AT1G03457.2 353005

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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