261601 PA14
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261601 chr_2 PA14 2486854 2505235 + PA14

Synonyms

NCBI ID Ensembl Genomes exon ID
7450482 Thaps261601.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0326

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0189
 0.32

Most Highly Correlated Transcripts

bd877

(bd877) NA
0.9477

35748

Dynein_heavy superfamily
0.9093

9818

hypothetical protein
0.8973

31145

COG4581
0.8963

3478

hypothetical protein
0.8928

36650

hypothetical protein
0.8818

bd643

(bd643) NA
0.8813

23362

NT_PAP_TUTase
0.8777

264498

PRK00142
0.8692

22721

hypothetical protein
0.8678

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein... cl00065 64.8251 1.58E-11 5916 - 6004 specific 238020
FN3 superfamily Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein... - 64.8251 1.58E-11 5916 - 6004 superfamily 260168
PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases... cl08459 90.9242 5.18E-20 4531 - 4669 specific 214807
Glyco_hydro_3_C superfamily Glycosyl hydrolase family 3 C-terminal domain; This domain is involved in catalysis and may be... - 63.9603 6.82E-11 3310 - 3461 superfamily 263668
PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases... cl08459 90.9242 5.18E-20 4531 - 4669 specific 214807
Glyco_hydro_3_C superfamily Glycosyl hydrolase family 3 C-terminal domain; This domain is involved in catalysis and may be... - 63.9603 6.82E-11 3310 - 3461 superfamily 263668
Glyco_hydro_3_C superfamily Glycosyl hydrolase family 3 C-terminal domain; This domain is involved in catalysis and may be... - 63.9603 6.82E-11 3310 - 3461 superfamily 263668

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre07.g338300.t1.1 Not available 555666

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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