261684 (LEUS) PLN02563
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261684 chr_3 (LEUS) PLN02563 372131 375082 - PLN02563

Synonyms

NCBI ID Ensembl Genomes exon ID
7441753 Thaps261684.2, Thaps261684.3, Thaps261684.1, Thaps261684.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

24832

hypothetical protein
0.931

bd211

(bd211) Maf_Ham1 superfamily
0.9257

bd1306

(bd1306) NA
0.9235

bd1078

(bd1078) NA
0.9227

23462

hypothetical protein
0.9206

ThpsCp082

(rpl34) ribosomal protein L34
0.9175

bd1893

(bd1893) NA
0.9167

ThpsCp134

(rpl34) ribosomal protein L34
0.916

bd758

(bd758) NA
0.9137

bd208

(bd208) DUF3529
0.9101

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LeuRS_core catalytic core domain of leucyl-tRNA synthetases; Leucyl tRNA synthetase (LeuRS) catalytic core... cl00015 292.614 8.32E-91 114 - 731 specific 173906
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 292.614 8.32E-91 114 - 731 superfamily 260139
Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; This... cl12020 141.203 8.41E-39 731 - 834 specific 153412
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 141.203 8.41E-39 731 - 834 superfamily 264512
tRNA-synt_1_2 superfamily Leucyl-tRNA synthetase, Domain 2; This is a family of the conserved region of Leucine-tRNA ligase... - 288.224 5.27E-91 303 - 486 superfamily 257918
tRNA-synt_1_2 superfamily Leucyl-tRNA synthetase, Domain 2; This is a family of the conserved region of Leucine-tRNA ligase... - 288.224 5.27E-91 303 - 486 superfamily 257918
PLN02563 aminoacyl-tRNA ligase - 1620.67 0 9 - 918 multi-dom 178177

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51120 PHATRDRAFT_51120 254958 296884 420918 Cre13.g578451.t1.1 AT4G04350.1 314467

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004823 GO:0006429 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004823

leucine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu).
GO Category: 
MF

GO:0006429

leucyl-tRNA aminoacylation

Details: 
The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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