261803 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261803	chr_3	LRR_RI superfamily	1064598	1066445	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448767	Thaps261803.3, Thaps261803.2, Thaps261803.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0157

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0032	0.47	3.5 20000

Most Highly Correlated Transcripts

bd2107 (bd2107) ATP_bind_1 0.6771	24954 hypothetical protein 0.6599	37258 ADK 0.6579	ThpsCp047 (ycf33) hypothetical protein 0.6463	18662 ADK 0.6406	5328 hypothetical protein 0.6299
bd1076 (bd1076) NA 0.6142	bd1810 (bd1810) FAD_binding_4 0.6063	263745 PDEase_I 0.6032	12206 Bestrophin superfamily 0.6024

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	67.7657	8.27E-13	155 - 343	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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