261916 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261916	chr_3	RING	1886599	1890233	-	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452056	Thaps261916.1, Thaps261916.2, Thaps261916.5, Thaps261916.4, Thaps261916.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0476

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9245	21220 KU superfamily 0.9136	21705 hypothetical protein 0.9125	bd1100 (bd1100) NA 0.91	23560 hypothetical protein 0.9069	6167 Cullin 0.9034
24174 DUF1336 superfamily 0.9025	22128 DENN 0.9022	36372 S_TKc 0.9011	22265 hypothetical protein 0.9011

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	59.7668	4.91E-11	1017 - 1064	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	59.7668	4.91E-11	1017 - 1064	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48146	PHATRDRAFT_48146	269881	286614	Not available	Cre08.g381900.t1.2	AT4G28370.1	519898

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

Add comment

Log in to post comments