262153 Glyco_18
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262153 chr_4 Glyco_18 966093 971738 + Glyco_18

Synonyms

NCBI ID Ensembl Genomes exon ID
7447934 Thaps262153.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0459

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0085
 0.45

Most Highly Correlated Transcripts

263096

lysozyme_like superfamily
0.8874

268966

GH18_chitinase-like superfamily
0.8338

42283

RabGAP-TBC
0.8331

10873

NA
0.8153

8797

hypothetical protein
0.8032

bd812

(bd812) NA
0.8014

bd1861

(bd1861) PTZ00141
0.784

bd1770

(bd1770) NA
0.7834

33699

TRX_family
0.7728

261614

SPRY_RanBP_like
0.7716

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 229.368 1.12E-65 1080 - 1413 superfamily 263970
Glyco_18 Glyco_18 domain; Glyco_18 domain. - 246.436 7.18E-72 1079 - 1413 multi-dom 214753

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016787 GO:0004568 GO:0008843 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0008843

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF

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