262191 RNase_HI_RT_Ty1Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262191	chr_4	RNase_HI_RT_Ty1	1266375	1266977	-	RNase_HI_RT_Ty1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448786	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0343

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0072	0.37	0.000000000000001 0.0000000000046

Most Highly Correlated Transcripts

263864 0.9807	bd1098 (bd1098) NA 0.9321	bd813 (bd813) NA 0.9286	bd788 (bd788) NA 0.9104	4108 hypothetical protein 0.9093	bd824 (bd824) NA 0.8773
264479 FG-GAP_2 0.8653	bd759 (bd759) NA 0.8443	bd822 (bd822) NA 0.8332	bd633 (bd633) NA 0.831

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_HI_RT_Ty1		Ty1/Copia family of RNase HI in long-term repeat retroelements; Ribonuclease H (RNase H) enzymes...	cl14782	74.8121	2.62E-17	12 - 66	specific	260004
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	74.8121	2.62E-17	12 - 66	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	244510	203174	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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