262625 gatB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262625 chr_5 gatB 1954101 1956193 + gatB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0184
 0.33

Most Highly Correlated Transcripts

23306

hypothetical protein
0.889

1835

hypothetical protein
0.886

4372

hypothetical protein
0.8789

11606

hypothetical protein
0.8777

24332

hypothetical protein
0.8765

261750

GckA
0.8744

2157

D123 superfamily
0.8713

22685

COG2520
0.8704

26492

PRK05385
0.8689

23179

PTZ00416
0.8685

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GatB_N superfamily GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins. - 352.131 2.94E-117 75 - 366 superfamily 251629
GatB_N superfamily GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins. - 352.131 2.94E-117 75 - 366 superfamily 251629
GatB_Yqey GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about 140... cl17694 111.442 1.35E-28 434 - 577 specific 197913
GatB_Yqey superfamily GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This domain is... - 111.442 1.35E-28 434 - 577 superfamily 266776
gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated - 477.254 3.34E-163 74 - 577 multi-dom 235489

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11126 PHATRDRAFT_11126 147678 175442 Not available Cre14.g627488.t1.1 AT1G48520.1 482876

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006412 GO:0017068 GO:0016874 GO:0016884 -

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0017068

NA

Details: 
NA
GO Category: 
NA

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0016884

carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Details: 
Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction.
GO Category: 
MF

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