262659 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262659	chr_5	Tryp_SPc	2164809	2167341	-	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444920	Thaps262659.3, Thaps262659.2, Thaps262659.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0300

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0273	0.40	0.4 55

Most Highly Correlated Transcripts

22899 hypothetical protein 0.9336	21274 hypothetical protein 0.9148	596 Adaptin_N 0.9103	22666 hypothetical protein 0.9044	5801 hypothetical protein 0.9004	32704 PKc_like superfamily 0.9002
263979 PKc_like superfamily 0.8948	8657 hypothetical protein 0.8928	12500 SNF2_N 0.8916	262152 hypothetical protein 0.8899

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	212.907	1.79E-63	108 - 356	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	212.907	1.79E-63	108 - 356	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	209.842	2.29E-62	107 - 353	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	267240	99435	444563	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 GO:0030019 -

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