262936 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262936 chr_6 Aa_trans superfamily 1287087 1288369 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453267 Thaps262936.3, Thaps262936.2, Thaps262936.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0102

Most Highly Correlated Transcripts

270222

0.9694

8509

hypothetical protein
0.8757

4091

hypothetical protein
0.8735

7567

hypothetical protein
0.8719

32491

p450 superfamily
0.8683

40868

EMP70 superfamily
0.8676

1696

hypothetical protein
0.8641

12836

EEP superfamily
0.8568

7945

hypothetical protein
0.8523

6710

hypothetical protein
0.8519

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 82.3457 1.23E-17 85 - 381 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

Add comment

Log in to post comments