263451 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263451	chr_8	Tryp_SPc	1042066	1043095	-	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449873	Thaps263451.1, Thaps263451.3, Thaps263451.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0481

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0154	0.36	1900 100000

Most Highly Correlated Transcripts

7335 hypothetical protein 0.9162	bd739 (bd739) NA 0.9026	bd1802 (bd1802) NA 0.9009	bd1877 (bd1877) NA 0.8852	bd738 (bd738) NA 0.8608	bd938 (bd938) PBP2_NikA_DppA_OppA_like superfamily 0.8566
bd1801 (bd1801) NA 0.853	bd1891 (bd1891) COG3899 0.848	bd1890 (bd1890) NA 0.8082	7336 hypothetical protein 0.7999

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	215.603	9.24E-69	82 - 297	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	215.603	9.24E-69	82 - 297	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	218.316	7.15E-70	81 - 297	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

Add comment

Log in to post comments