263489 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263489 chr_9 WD40 186934 188494 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7445002 Thaps263489.3, Thaps263489.2, Thaps263489.1, Thaps263489.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0098

Most Highly Correlated Transcripts

9880

SGNH_hydrolase superfamily
0.9168

2145

hypothetical protein
0.9163

22785

DUF336
0.9135

264492

Peptidase_C1A
0.9069

6693

hypothetical protein
0.9042

22963

WD40 superfamily
0.897

5659

hypothetical protein
0.8957

6121

hypothetical protein
0.8921

3354

hypothetical protein
0.8919

21681

hypothetical protein
0.8908

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 247.248 2.95E-78 127 - 445 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 247.248 2.95E-78 127 - 445 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 158.713 3.42E-43 127 - 447 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17300 PHATRDRAFT_17300 174188 285760 Not available Not available Not available 553886

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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