263505 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263505 chr_9 CHD 307991 309577 + CHD

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0378

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0042
 0.43

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9344

bd446

(bd446) HrpA
0.9126

8500

PRP38 superfamily
0.8999

3680

hypothetical protein
0.8843

bd1949

(bd1949) NA
0.8834

267933

S_TKc
0.88

264556

FBPase
0.8797

261400

NA
0.878

268526

hypothetical protein
0.8743

8287

hypothetical protein
0.8732

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 203.965 2.36E-63 221 - 392 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 203.965 2.36E-63 221 - 392 superfamily 264492
PAS superfamily PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising... - 63.4211 2.05E-12 84 - 185 superfamily 238075
PAS superfamily PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising... - 63.4211 2.05E-12 84 - 185 superfamily 238075
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 195.169 1.14E-59 185 - 375 multi-dom 214485
sensory_box PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain... - 90.0338 9.35E-22 70 - 185 multi-dom 232884

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 493224

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 GO:0004016 GO:0008294 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

GO:0004016

adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
GO Category: 
MF

GO:0008294

calcium- and calmodulin-responsive adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin.
GO Category: 
MF

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