263717 DNA_pol_E_BThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263717	chr_10	DNA_pol_E_B	913199	915210	-	DNA_pol_E_B

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446911	Thaps263717.1, Thaps263717.6, Thaps263717.4, Thaps263717.2, Thaps263717.5, Thaps263717.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0177

Most Highly Correlated Transcripts

6288 hypothetical protein 0.9068	bd392 (bd392) DEXDc 0.8985	4580 FIG superfamily 0.8924	8509 hypothetical protein 0.8897	9111 hypothetical protein 0.8884	25653 hypothetical protein 0.877
23029 hypothetical protein 0.87	21259 UAA 0.8687	9166 hypothetical protein 0.8684	7945 hypothetical protein 0.8661

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DNA_pol_E_B		DNA polymerase alpha/epsilon subunit B; This family contains a number of DNA polymerase subunits....	cl13995	167.85	2.00E-48	289 - 493	specific	252332
MPP_superfamily superfamily		metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known...	-	167.85	2.00E-48	289 - 493	superfamily	265413

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50274	PHATRDRAFT_50274	235118	200694	Not available	Cre10.g424200.t1.1	AT5G22110.1	478820

KEGG

KEGG description	KEGG Pathway
Nucleotide excision repair	map03420

GO Terms

GO:0003677 GO:0003887 GO:0005634 GO:0006260 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

GO Category:

GO:0006260

DNA replication

Details:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

263717 DNA_pol_E_B
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0003887

GO:0005634

GO:0006260

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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