263724 sigpep_I_bact
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263724 chr_10 sigpep_I_bact 941891 943723 - sigpep_I_bact

Synonyms

NCBI ID Ensembl Genomes exon ID
7450766 Thaps263724.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0287
 0.36

Most Highly Correlated Transcripts

30701

PRK05279
0.9448

261400

NA
0.9216

4916

hypothetical protein
0.9209

261490

HemK
0.9186

268257

fabG
0.9164

bd392

(bd392) DEXDc
0.9158

4192

hypothetical protein
0.9089

40293

TRX_family
0.9086

9417

DUF1777
0.9084

264674

2OG-FeII_Oxy_3 superfamily
0.9084

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89... cl10465 76.0851 9.81E-17 440 - 594 specific 119398
Peptidase_S24_S26 superfamily The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase... - 76.0851 9.81E-17 440 - 594 superfamily 263975
sigpep_I_bact signal peptidase I, bacterial type; This model represents signal peptidase I from most bacteria.... - 111.953 1.39E-28 426 - 601 multi-dom 233790

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47594 PHATRDRAFT_47594 162195 149469 225250 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0016020 GO:0009004 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0009004

NA

Details: 
NA
GO Category: 
NA

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