263834 RNR_PFL superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263834 chr_11a RNR_PFL superfamily 779377 781075 + RNR_PFL superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0117

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0062
 0.41

Most Highly Correlated Transcripts

264757

RNR_PFL superfamily
1

264753

RNR_PFL superfamily
0.9767

263830

RNR_PFL superfamily
0.9763

4108

hypothetical protein
0.964

38760

pyr_form_ly_1
0.9631

bd1840

(bd1840) NA
0.9501

36689

pyr_form_ly_1
0.9435

38597

pyr_form_ly_1
0.942

36702

pyr_form_ly_1
0.9331

bd1756

(bd1756) NA
0.9152

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 65.4325 1.34E-12 222 - 433 superfamily 100105
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 65.4325 1.34E-12 222 - 433 superfamily 100105
RNR_PFL superfamily Ribonucleotide reductase and Pyruvate formate lyase; Ribonucleotide reductase (RNR) and pyruvate... - 281.947 1.50E-86 2 - 154 superfamily 245211
PFLA pyruvate formate-lyase 1-activating enzyme; An iron-sulfur protein with a radical-SAM domain (... - 220.703 1.19E-68 205 - 433 multi-dom 131546

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0006800 GO:0016491 GO:0003824 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006800

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

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