264346 (Tp_HSF_3.7b) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264346 chr_15 (Tp_HSF_3.7b) HSF_DNA-bind 889222 889937 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7450318 Thaps264346.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0489

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0022
 0.44

Most Highly Correlated Transcripts

264072

(HSF43) HSF_DNA-bind superfamily
0.9039

264937

hypothetical protein
0.9018

21274

hypothetical protein
0.8953

38180

RED_N superfamily
0.8947

21655

hypothetical protein
0.8938

37638

HrpA
0.891

261261

ArfGap
0.891

10873

NA
0.8903

269100

S_TKc
0.8885

263979

PKc_like superfamily
0.8883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 89.0962 1.02E-22 126 - 213 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 89.0962 1.02E-22 126 - 213 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 191060 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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