264537 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264537 chr_18 Aa_trans superfamily 621859 623209 + Aa_trans superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

264598

AAA
0.8799

22651

hypothetical protein
0.8781

269160

(gltD) GltD
0.8629

261823

FIG superfamily
0.8487

268581

hypothetical protein
0.8476

36007

Aldolase_II superfamily
0.8467

268280

(LAT2) PDHac_trf_mito
0.8435

264891

Glyco_hydro_30 superfamily
0.841

264005

Glyco_hydrolase_16 superfamily
0.8377

21177

(LAT1_2) lipoyl_domain
0.8352

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 132.036 1.24E-34 15 - 380 superfamily 266708
SdaC Amino acid permeases [Amino acid transport and metabolism] - 76.1508 1.54E-15 22 - 373 multi-dom 223884

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9355 PHATRDRAFT_9355 223540 244513 225551 Cre03.g168550.t1.1 AT2G39130.1 516501

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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