264576 lysozyme_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264576 chr_19a_19 lysozyme_like superfamily 163611 168050 - lysozyme_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449888 Thaps264576.2, Thaps264576.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0469

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

269439

hypothetical protein
0.9396

264577

lysozyme_like superfamily
0.9324

8657

hypothetical protein
0.9269

596

Adaptin_N
0.9268

4959

hypothetical protein
0.924

31437

Peptidase_M16 superfamily
0.9236

27435

PAH
0.9228

263191

PLN03076
0.9217

33984

PKc_like superfamily
0.9215

261495

Peptidase_M36
0.9213

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
lysozyme_like superfamily lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT... - 87.351 8.83E-19 336 - 545 superfamily 260275

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004568 GO:0006032 GO:0009613 GO:0016998 GO:0008843 -

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0006032

chitin catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0009613

NA

Details: 
NA
GO Category: 
NA

GO:0016998

cell wall macromolecule catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
GO Category: 
BP

GO:0008843

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF

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