264577 lysozyme_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264577 chr_19a_19 lysozyme_like superfamily 167866 169437 - lysozyme_like superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0258

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

269307

hypothetical protein
0.9664

263097

GH18_chitinase-like superfamily
0.955

269439

hypothetical protein
0.9366

264576

lysozyme_like superfamily
0.9324

263734

LRR_RI superfamily
0.9262

32564

KISc
0.9246

263786

(ZFP20) zf-TAZ
0.9162

37960

(MYO5) MYSc
0.9152

263859

GH18_chitinase-like superfamily
0.9136

262152

hypothetical protein
0.9119

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
lysozyme_like superfamily lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT... - 101.603 2.35E-25 150 - 346 superfamily 260275

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 293339

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004568 GO:0006032 GO:0009613 GO:0016998 GO:0008843 -

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0006032

chitin catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0009613

NA

Details: 
NA
GO Category: 
NA

GO:0016998

cell wall macromolecule catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
GO Category: 
BP

GO:0008843

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF

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