264660 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264660 chr_20 FG-GAP_2 9552 10399 + FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7447795 Thaps264660.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0342

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0072
 0.37

Most Highly Correlated Transcripts

bd788

(bd788) NA
0.9713

262676

0.932

bd813

(bd813) NA
0.9049

bd824

(bd824) NA
0.9038

bd633

(bd633) NA
0.8957

bd1097

(bd1097) NA
0.8852

264954

FG-GAP_2
0.8832

263938

FG-GAP_2
0.8758

264557

FG-GAP_2
0.8738

4108

hypothetical protein
0.8736

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 61.7257 6.47E-13 100 - 145 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

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