264699 ATS1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264699 chr_20 ATS1 373240 375284 - ATS1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448536 Thaps264699.4, Thaps264699.2, Thaps264699.3, Thaps264699.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8993

264002

guanyl nucleotide exchange factor
0.8901

263961

(Tp_Myb1R1) MYB DNA binding protein/ transcription factor-like protein
0.8827

39232

PP2Cc
0.8821

268144

OTU
0.8817

11455

EXS
0.8797

32216

(RT5) rpsE_bact
0.8789

21464

BTB
0.8779

261516

ArfGap
0.8758

29469

hypothetical protein
0.8752

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 124.95 3.91E-31 187 - 494 multi-dom 227511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50520 PHATRDRAFT_50520 185872 250137 198992 Cre17.g742200.t1.1 AT1G19880.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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