2647 lysozyme_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2647 chr_2 lysozyme_like superfamily 1497010 1498173 + lysozyme_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443061 Thaps2647.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0485

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0031
 0.36

Most Highly Correlated Transcripts

261895

GH18_chitinase-like superfamily
0.9003

bd1891

(bd1891) COG3899
0.8535

21673

hypothetical protein
0.8422

bd1487

(bd1487) PLN02688
0.8387

21586

hypothetical protein
0.8366

9463

hypothetical protein
0.8362

7830

7tm_3 superfamily
0.8275

21613

hypothetical protein
0.8206

22959

hypothetical protein
0.8125

23841

hypothetical protein
0.8121

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
lysozyme_like superfamily lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT... - 109.307 7.02E-28 102 - 353 superfamily 260275

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 477026

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004568 GO:0006032 GO:0009613 GO:0016998 GO:0008843 -

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0006032

chitin catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0009613

NA

Details: 
NA
GO Category: 
NA

GO:0016998

cell wall macromolecule catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
GO Category: 
BP

GO:0008843

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF

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