264954 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264954 chr_24 FG-GAP_2 288325 289279 - FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7452034 Thaps264954.1, Thaps264954.3, Thaps264954.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0342

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0072
 0.37

Most Highly Correlated Transcripts

262676

0.9497

bd788

(bd788) NA
0.9317

bd1097

(bd1097) NA
0.931

4108

hypothetical protein
0.9253

264479

FG-GAP_2
0.9173

264659

0.9124

263938

FG-GAP_2
0.9123

264557

FG-GAP_2
0.885

264660

FG-GAP_2
0.8832

bd813

(bd813) NA
0.8829

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 66.7333 2.98E-15 54 - 103 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 66.7333 2.98E-15 54 - 103 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 66.7333 2.98E-15 54 - 103 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 66.7333 2.98E-15 54 - 103 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

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