268160 SPFH_like_u4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268160 chr_2 SPFH_like_u4 138249 139415 + SPFH_like_u4

Synonyms

NCBI ID Ensembl Genomes exon ID
7442187 Thaps268160.1, Thaps268160.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0107

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0242
 0.38

Most Highly Correlated Transcripts

40630

SPFH_like_u4
0.9381

42320

PTZ00464 superfamily
0.9036

20740

hypothetical protein
0.8782

261882

Thioredoxin_like superfamily
0.8665

26991

GRX_GRXh_1_2_like
0.8662

4026

hypothetical protein
0.8645

264807

ATP-synt_C superfamily
0.8593

268054

hypothetical protein
0.8571

37058

TRX_family
0.8544

8058

hypothetical protein
0.8454

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPFH_like_u4 Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... cl19107 402.734 1.03E-141 19 - 274 specific 259805
SPFH_like superfamily core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... - 402.734 1.03E-141 19 - 274 superfamily 267460
HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein... - 98.2841 4.26E-24 19 - 193 multi-dom 223407

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19805 PHATRDRAFT_19805 270904 252777 363433 Cre16.g690879.t1.1 AT3G01290.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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