268228 2A0106
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268228 chr_2 2A0106 718488 720068 - 2A0106

Synonyms

NCBI ID Ensembl Genomes exon ID
7446505 Thaps268228.2, Thaps268228.1, Thaps268228.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0174

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0116
 0.38

Most Highly Correlated Transcripts

261400

NA
0.9243

2669

MmsB
0.9125

35025

Lung_7-TM_R superfamily
0.9076

20664

hypothetical protein
0.9057

10856

hypothetical protein
0.903

268192

Zip superfamily
0.902

35956

SIR2 superfamily
0.902

11479

hypothetical protein
0.8954

4512

hypothetical protein
0.8948

5038

DUF179
0.8943

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 120.111 1.66E-30 13 - 425 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 120.111 1.66E-30 13 - 425 superfamily 119392
2A0106 metabolite-proton symporter; This model represents the metabolite:H+ symport subfamily of the major... - 270.682 1.46E-85 19 - 419 multi-dom 233168

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 274116 235651 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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