268845 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268845	chr_5	COG3899	440854	444223	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451756	Thaps268845.7, Thaps268845.4, Thaps268845.1, Thaps268845.6, Thaps268845.5, Thaps268845.3, Thaps268845.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0453

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0097	0.39	0.37 0.009

Most Highly Correlated Transcripts

9103 hypothetical protein 0.7821	8408 hypothetical protein 0.7766	6629 hypothetical protein 0.7653	7924 hypothetical protein 0.7585	8503 DUF2431 0.7575	bd857 (bd857) NA 0.7562
262980 DEXDc 0.7545	33182 S_TKc 0.751	269726 Tryp_SPc 0.7439	25525 hypothetical protein 0.7431

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	80.1993	3.85E-17	6 - 173	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	80.1993	3.85E-17	6 - 173	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	265.801	1.91E-75	9 - 761	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments