268863 COG4178
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268863 chr_5 COG4178 665710 668530 - COG4178

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0171

Most Highly Correlated Transcripts

21304

hypothetical protein
0.9219

10894

hypothetical protein
0.9167

23169

hypothetical protein
0.9151

921

hypothetical protein
0.9121

7898

DUF676 superfamily
0.9097

33766

ATPase-IIA2_Ca
0.9073

25509

hypothetical protein
0.9069

13448

Sec1
0.9067

9534

(FGS1) FolC
0.9057

24947

zf-DHHC
0.9049

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCD_peroxisomal_ALDP ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding... cl17201 207.777 1.16E-62 469 - 689 specific 213190
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 207.777 1.16E-62 469 - 689 superfamily 266551
ABC_membrane_2 superfamily ABC transporter transmembrane region 2; This domain covers the transmembrane of a small family of... - 182.43 3.77E-52 99 - 349 superfamily 260492
COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function... - 458.312 2.97E-152 97 - 698 multi-dom 226646

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 66117 Cre10.g439000.t1.1 AT1G54350.1 561133

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments