269520 (CGL1) MetC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269520 chr_10 (CGL1) MetC 694558 696228 + MetC

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0335

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0275
 0.38

Most Highly Correlated Transcripts

bd735

(bd735) NA
0.8989

bd1935

(bd1935) NA
0.8854

2628

hypothetical protein
0.8301

23996

hypothetical protein
0.8161

25435

hypothetical protein
0.8057

21405

hypothetical protein
0.804

21090

hypothetical protein
0.8028

263864

0.8013

bd1692

(bd1692) NA
0.801

bd885

(bd885) NA
0.7964

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] cl18945 379.625 4.18E-128 61 - 451 specific 223699
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 379.625 4.18E-128 61 - 451 superfamily 267298

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14962 PHATRDRAFT_14962 192916 245849 72929 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006520 GO:0004123 -

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0004123

cystathionine gamma-lyase activity

Details: 
Catalysis of the reaction: L-cystathionine + H2O = 2-oxobutanoate + L-cysteine + NH4+.
GO Category: 
MF

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