269763 Riboflavin_deaminase-reductaseThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269763	chr_14	Riboflavin_deaminase-reductase	465422	466522	+	Riboflavin_deaminase-reductase

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451231	Thaps269763.1, Thaps269763.3, Thaps269763.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0041

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0236	0.32	990 700

Most Highly Correlated Transcripts

6610 hypothetical protein 0.923	ThpsCp134 (rpl34) ribosomal protein L34 0.8992	ThpsCp115 (rps13) ribosomal protein S13 0.8859	ThpsCp110 (rpl6) ribosomal protein L6 0.8835	ThpsCp119 (rps9) ribosomal protein S9 0.8802	22449 hypothetical protein 0.8793
ThpsCp109 (rps8) ribosomal protein S8 0.8772	4138 hypothetical protein 0.875	ThpsCp118 (rpl13) ribosomal protein L13 0.8739	ThpsCp103 (rpl16) ribosomal protein L16 0.8707

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Riboflavin_deaminase-reductase		Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (...	cl00269	158.167	1.45E-48	105 - 225	specific	238611
cytidine_deaminase-like superfamily		Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases...	-	158.167	1.45E-48	105 - 225	superfamily	260314

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_33427	PHATR_33427	197036	254879	457738	Cre12.g555951.t1.1	AT4G20960.1	353729

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008270 GO:0016787 -

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