269925 AAA_12 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269925	chr_17	AAA_12 superfamily	610740	611604	-	AAA_12 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453097	Thaps269925.3, Thaps269925.2, Thaps269925.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0188	0.22	16 11

Most Highly Correlated Transcripts

7151 hypothetical protein 0.9434	25767 hypothetical protein 0.9384	2392 hypothetical protein 0.9284	264345 SpoU 0.9245	264623 SpoVK 0.923	38679 UBQ superfamily 0.9206
19623 RRM3_MEI2_like 0.9192	38472 HA2 0.918	26071 (PSB_1) Ntn_hydrolase superfamily 0.9176	4108 hypothetical protein 0.9162

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	138.065	9.39E-41	12 - 134	superfamily	257490
COG1112		Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and...	-	99.2652	2.43E-24	30 - 150	multi-dom	224037

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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