269953 S49_Sppa_N_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269953 chr_18 S49_Sppa_N_C 505737 507171 + S49_Sppa_N_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7444786 Thaps269953.2, Thaps269953.1, Thaps269953.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0325

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9243

bd1841

(bd1841) CAP10 superfamily
0.9213

bd1808

(bd1808) NA
0.9121

bd410

(bd410) HNHc
0.905

268443

SAICAR_synt_Sc
0.9036

22531

hypothetical protein
0.8979

bd1941

(bd1941) NA
0.8946

bd1786

(bd1786) GLTP superfamily
0.8844

24525

hypothetical protein
0.8735

19158

GRX_PICOT_like
0.8725

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Signal peptide... cl15763 166.894 3.34E-49 90 - 294 specific 132934
Clp_protease_like superfamily Caseinolytic protease (ClpP) is an ATP-dependent protease; Clp protease (caseinolytic protease;... - 166.894 3.34E-49 90 - 294 superfamily 265774

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 174364 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008233 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

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