269988 tRNA_Me_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269988 chr_19b_31 tRNA_Me_trans 19888 21907 - tRNA_Me_trans

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196

Most Highly Correlated Transcripts

23740

DUF72
0.9132

24635

hypothetical protein
0.9021

8414

NA
0.8994

24212

hypothetical protein
0.8989

261400

NA
0.8964

6472

hypothetical protein
0.8936

15292

Fumble
0.8934

261734

2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_
0.892

261431

ABC_ATPase superfamily
0.8912

267964

Cullin
0.8892

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-... cl00292 376.862 8.46E-127 96 - 489 specific 238956
AANH_like superfamily Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases... - 376.862 8.46E-127 96 - 489 superfamily 260331
tRNA_Me_trans tRNA methyl transferase; This family represents tRNA(5-methylaminomethyl-2-thiouridine)-... - 371.195 1.77E-124 96 - 489 multi-dom 251696

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3425 PHATRDRAFT_3425 205230 234685 437795 Not available Not available 563700

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004808 GO:0005737 GO:0008033 -

GO:0004808

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing 5-aminomethyl-2-thiouridine = S-adenosyl-L-homocysteine + tRNA containing 5-methylaminomethyl-2-thiouridylate.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

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