27187 (TAL1_1) PTZ00411
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27187 chr_2 (TAL1_1) PTZ00411 1789184 1790980 + PTZ00411

Synonyms

NCBI ID Ensembl Genomes exon ID
7452450 Thaps27187.2, Thaps27187.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0195

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0025
 0.38

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9112

20405

GRX_GRXh_1_2_like
0.8515

261882

Thioredoxin_like superfamily
0.846

26991

GRX_GRXh_1_2_like
0.8458

37934

GRX_PICOT_like
0.8445

37585

MECDP_synthase
0.8285

41655

Chloroa_b-bind
0.821

269624

TIM_phosphate_binding superfamily
0.82

31829

CBS_like
0.8108

3071

NA
0.81

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Transaldolase_TalAB Transaldolases including both TalA and TalB; Transaldolases including both TalA and TalB. The... cl17187 524.875 0 3 - 308 specific 188644
Aldolase_Class_I superfamily Class I aldolases; Class I aldolases. The class I aldolases use an active-site lysine which... - 524.875 0 3 - 308 superfamily 266539
PTZ00411 transaldolase-like protein; Provisional - 512.747 0 1 - 312 multi-dom 240406

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28222 PHATRDRAFT_28222 213583 211504 Not available Cre01.g032650.t1.2 AT1G12230.1 295949

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0005975 GO:0004801 GO:0005737 GO:0006098 -

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0004801

sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity

Details: 
Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006098

pentose-phosphate shunt

Details: 
The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
GO Category: 
BP

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