27352 PLN00158
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27352 chr_3 PLN00158 337191 337975 + PLN00158

Synonyms

NCBI ID Ensembl Genomes exon ID
7441745 Thaps27352.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0006

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

6140

hypothetical protein
0.8903

10059

hypothetical protein
0.8647

8737

hypothetical protein
0.8578

262564

VATPase_H superfamily
0.8512

10889

hypothetical protein
0.8469

39847

(APM2) AP-2_Mu2_Cterm
0.8406

bd1938

(bd1938) NA
0.8362

34514

PLN02539
0.8354

5600

Thioredoxin_like superfamily
0.8319

bd1934

(bd1934) NA
0.8304

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00158 histone H2B; Provisional cl00074 172.182 6.08E-56 1 - 120 specific 215081
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 172.182 6.08E-56 1 - 120 superfamily 260174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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