28148 (NIT2) nit
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28148 chr_5 (NIT2) nit 89450 90735 + nit

Synonyms

NCBI ID Ensembl Genomes exon ID
7447245 Thaps28148.1, Thaps28148.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0214

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0136
 0.28

Most Highly Correlated Transcripts

3913

LCM
0.9306

2702

Pro_isomerase
0.9272

22850

DUF4239
0.9204

5038

DUF179
0.9152

260816

DAGK_acc superfamily
0.9139

21722

Aldo_ket_red
0.9124

8038

hypothetical protein
0.912

23170

hypothetical protein
0.9091

35956

SIR2 superfamily
0.9087

3564

hypothetical protein
0.9087

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases); This... cl11424 386.782 6.81E-135 17 - 306 specific 143596
nitrilase superfamily Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes... - 386.782 6.81E-135 17 - 306 superfamily 264361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15536 PHATRDRAFT_15536 271202 195734 198908 Cre12.g507558.t1.1 AT5G12040.1 541353

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006807 GO:0016810 -

GO:0006807

nitrogen compound metabolic process

Details: 
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO Category: 
BP

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Details: 
Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
GO Category: 
MF

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