30004 COG0385
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30004 chr_14 COG0385 435434 436855 - COG0385

Synonyms

NCBI ID Ensembl Genomes exon ID
7452664 Thaps30004.1, Thaps30004.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0059

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0133
 0.40

Most Highly Correlated Transcripts

bd208

(bd208) DUF3529
0.9446

bd1403

(bd1403) NA
0.9303

bd1380

(bd1380) ycf39
0.9244

bd1306

(bd1306) NA
0.918

bd1863

(bd1863) NA
0.9007

bd1652

(bd1652) ABC_ATPase superfamily
0.8996

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8973

bd1820

(bd1820) Fasciclin
0.8968

bd1342

(bd1342) psaL
0.8908

bd1645

(bd1645) tpt
0.8885

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG0385 Predicted Na+-dependent transporter [General function prediction only] cl19217 164.328 1.04E-46 75 - 393 specific 223462
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 164.328 1.04E-46 75 - 393 superfamily 267570

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_4286 PHATR_4286 196525 257435 Not available Cre12.g532500.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0008508 GO:0016020 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008508

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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