Thaps_bicluster_0133 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0133 0.40 Thalassiosira pseudonana
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Displaying 1 - 31 of 31
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10052 hypothetical protein

10052 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10052
11432 hypothetical protein

11432 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11432
14106 LrgB superfamily

14106 - LrgB superfamily

GO Terms:

GO:0016020

CD Domains:

Go To Gene Page:

14106
2012 hypothetical protein

2012 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2012
22405 Delta6-FADS-like

22405 - Delta6-FADS-like

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

22405
22768 hypothetical protein

22768 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22768
2344 hypothetical protein

2344 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2344
24413 LCAT

24413 - LCAT

GO Terms:

GO:0004607, GO:0006629

CD Domains:

Go To Gene Page:

24413
25040 NA

25040 - NA

GO Terms:

NA

CD Domains:

Go To Gene Page:

25040
261688 hypothetical protein

261688 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

261688
264121 GST_N_Sigma_like

264121 - GST_N_Sigma_like

GO Terms:

GO:0004667

CD Domains:

Go To Gene Page:

264121
268615 COG0579

268615 - COG0579

GO Terms:

GO:0006118, GO:0016491, GO:0004368, GO:0009331

CD Domains:

Go To Gene Page:

268615
270253 (NTT8) hypothetical protein

270253 - (NTT8) hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270253
2991 (Tp_CCCH22) DnaQ_like_exo superfamily

2991 - (Tp_CCCH22) DnaQ_like_exo superfamily

GO Terms:

GO:0003676, GO:0004527, GO:0005622

CD Domains:

Go To Gene Page:

2991
30004 COG0385

30004 - COG0385

GO Terms:

GO:0006814, GO:0008508, GO:0016020

CD Domains:

Go To Gene Page:

30004
31394 COG0436

31394 - COG0436

GO Terms:

GO:0003824, GO:0009058, GO:0016769, GO:0004069

CD Domains:

Go To Gene Page:

31394
3202 hypothetical protein

3202 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3202
38800 plant_peroxidase_like superfamily

38800 - plant_peroxidase_like superfamily

GO Terms:

GO:0004601, GO:0006979, GO:0004130

CD Domains:

Go To Gene Page:

38800
41005 odpB

41005 - odpB

GO Terms:

GO:0004739

CD Domains:

Go To Gene Page:

41005
4424 LabA_like

4424 - LabA_like

GO Terms:

GO:0003677

CD Domains:

Go To Gene Page:

4424
4875 PRK06247

4875 - PRK06247

GO Terms:

GO:0004743, GO:0006096

CD Domains:

Go To Gene Page:

4875
5021 fabF

5021 - fabF

GO Terms:

GO:0003824, GO:0006633

CD Domains:

Go To Gene Page:

5021
5175 Flavokinase

5175 - Flavokinase

GO Terms:

GO:0008531, GO:0009231

CD Domains:

Go To Gene Page:

5175
5996 N2227 superfamily

5996 - N2227 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5996
6028 NA

6028 - NA

GO Terms:

NA

CD Domains:

Go To Gene Page:

6028
6253 hypothetical protein

6253 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6253
711 COG0385

711 - COG0385

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412, GO:0006814, GO:0008508, GO:0016020

CD Domains:

Go To Gene Page:

711
7155 hypothetical protein

7155 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7155
7677 (DDE) diadinoxanthin de-epoxidase

7677 - (DDE) diadinoxanthin de-epoxidase

GO Terms:

NA

CD Domains:

Go To Gene Page:

7677
ThpsCp123 (tufA) elongation factor Tu

ThpsCp123 - (tufA) elongation factor Tu

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp123
ThpsCt015 (trnfM(cau))

ThpsCt015 - (trnfM(cau))

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCt015
GO ID Go Term p-value q-value Cluster
GO:0006814 sodium ion transport 0.000255764 0.698747 Thaps_bicluster_0133
GO:0009231 riboflavin biosynthesis 0.0135745 1 Thaps_bicluster_0133
GO:0006636 fatty acid desaturation 0.0269812 1 Thaps_bicluster_0133
GO:0006633 fatty acid biosynthesis 0.0424129 1 Thaps_bicluster_0133
GO:0006979 response to oxidative stress 0.053299 1 Thaps_bicluster_0133
GO:0006629 lipid metabolism 0.0640724 1 Thaps_bicluster_0133
GO:0006096 glycolysis 0.0810783 1 Thaps_bicluster_0133
GO:0009058 biosynthesis 0.118319 1 Thaps_bicluster_0133
GO:0006412 protein biosynthesis 0.319237 1 Thaps_bicluster_0133
GO:0006118 electron transport 0.463588 1 Thaps_bicluster_0133
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