30193 (URE) PLN02303
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30193 chr_16a (URE) PLN02303 157981 160899 + PLN02303

Synonyms

NCBI ID Ensembl Genomes exon ID
7449980 Thaps30193.4, Thaps30193.3, Thaps30193.2, Thaps30193.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0247

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0008
 0.44

Most Highly Correlated Transcripts

6642

hypothetical protein
0.8923

36007

Aldolase_II superfamily
0.8602

20925

hypothetical protein
0.8585

264005

Glyco_hydrolase_16 superfamily
0.8568

264833

Lig
0.8476

268581

hypothetical protein
0.8473

16613

S_TKc
0.8431

267979

HCO3_cotransp superfamily
0.8379

23602

hypothetical protein
0.8372

35390

(KAR3) NADB_Rossmann superfamily
0.836

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of... cl00281 1016.87 0 226 - 806 specific 238221
metallo-dependent_hydrolases superfamily Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large... - 1016.87 0 226 - 806 superfamily 260323
Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of... cl00533 143.045 6.81E-40 95 - 191 specific 238238
Urease_beta superfamily Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of... - 143.045 6.81E-40 95 - 191 superfamily 260483
Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of... cl00532 98.4251 3.92E-24 1 - 60 specific 238229
Urease_gamma superfamily Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of... - 98.4251 3.92E-24 1 - 60 superfamily 260482
PLN02303 urease - 1268.9 0 1 - 807 multi-dom 215172

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29702 PHATRDRAFT_29702 235647 238534 423772 Not available AT1G67550.1 510339

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006807 GO:0009039 GO:0016151 GO:0016787 -

GO:0006807

nitrogen compound metabolic process

Details: 
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO Category: 
BP

GO:0009039

urease activity

Details: 
Catalysis of the reaction: urea + H2O = CO2 + 2 NH3.
GO Category: 
MF

GO:0016151

nickel cation binding

Details: 
Interacting selectively and non-covalently with nickel (Ni) cations.
GO Category: 
MF

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

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