30380 (TPI2) TIM
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30380 chr_18 (TPI2) TIM 374492 375690 - TIM

Synonyms

NCBI ID Ensembl Genomes exon ID
7444271 Thaps30380.2, Thaps30380.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0214

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0071
 0.35

Most Highly Correlated Transcripts

32945

(SDH1) sdhB
0.9038

8862

hypothetical protein
0.888

19764

MPC superfamily
0.8702

40713

SodA
0.8681

20405

GRX_GRXh_1_2_like
0.8674

889

hypothetical protein
0.8669

2678

Rotamase
0.8651

20664

hypothetical protein
0.8649

264628

UxaC
0.8643

268592

VDE superfamily
0.8627

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of... cl17186 323.334 4.99E-111 27 - 262 specific 238190
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 323.334 4.99E-111 27 - 262 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54738 PHATRDRAFT_54738 274452 247019 446527 Cre01.g029300.t1.2 Not available 285741

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004807 GO:0008152 -

GO:0004807

triose-phosphate isomerase activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

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