30457 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30457 chr_19a_19 SrmB 388809 389781 - SrmB

Synonyms

NCBI ID Ensembl Genomes exon ID
7449930 Thaps30457.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0499

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0056
 0.44

Most Highly Correlated Transcripts

11191

hypothetical protein
0.9397

20649

hypothetical protein
0.8658

25058

hypothetical protein
0.8643

264494

SIR2 superfamily
0.8633

10313

hypothetical protein
0.8626

25060

hypothetical protein
0.8521

29651

S_TKc
0.8486

9284

CYCc
0.8369

36897

S_TKc
0.8281

10311

hypothetical protein
0.8273

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 62.0465 4.86E-13 147 - 206 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 62.0465 4.86E-13 147 - 206 superfamily 258212
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 74.4414 1.50E-15 1 - 263 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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