30478 (hisH) PLN02617
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30478 chr_19b_31 (hisH) PLN02617 88769 90853 + PLN02617

Synonyms

NCBI ID Ensembl Genomes exon ID
7451802 Thaps30478.2, Thaps30478.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0288

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.9434

bd719

(bd719) NA
0.9257

bd687

(bd687) NA
0.9115

22389

hypothetical protein
0.9104

bd208

(bd208) DUF3529
0.9066

bd1652

(bd1652) ABC_ATPase superfamily
0.8977

41178

hisG
0.8948

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8924

bd1863

(bd1863) NA
0.8878

bd1078

(bd1078) NA
0.8848

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate... cl17186 287.825 3.86E-93 246 - 559 specific 240082
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 287.825 3.86E-93 246 - 559 superfamily 266538
GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (... cl00020 265.13 5.48E-85 9 - 220 specific 153219
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 265.13 5.48E-85 9 - 220 superfamily 260141
PLN02617 imidazole glycerol phosphate synthase hisHF - 980.737 0 1 - 568 multi-dom 178226

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19324 PHATRDRAFT_19324 195266 185684 426730 Cre11.g481500.t1.2 AT4G26900.1 351517

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0000105 GO:0000107 GO:0005737 GO:0009382 GO:0016763 GO:0018071 GO:0018121 GO:0018127 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0000105

histidine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
GO Category: 
BP

GO:0000107

imidazoleglycerol-phosphate synthase activity

Details: 
Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + aminoimidazole carboxamide ribonucleotide + L-glutamate + 2 H(+).
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009382

imidazoleglycerol-phosphate synthase complex

Details: 
Complex that possesses imidazoleglycerol-phosphate synthase activity.
GO Category: 
CC

GO:0016763

transferase activity, transferring pentosyl groups

Details: 
Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0018071

NAD(P)-cysteine ADP-ribosyltransferase activity

Details: 
Catalysis of the reaction: NAD(P)+ + L-cysteine = nicotinamide + N2-(ADP-D-ribosyl)-L-cysteine.
GO Category: 
MF

GO:0018121

NAD(P)-asparagine ADP-ribosyltransferase activity

Details: 
Catalysis of the reaction: NAD(P)+ + L-asparagine = nicotinamide + N2-(ADP-D-ribosyl)-L-asparagine.
GO Category: 
MF

GO:0018127

NAD(P)-serine ADP-ribosyltransferase activity

Details: 
Catalysis of the reaction: NAD(P)+ + L-serine = nicotinamide + N2-(ADP-D-ribosyl)-L-serine.
GO Category: 
MF

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