3183 PTZ00018
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3183 chr_3 PTZ00018 338699 339210 - PTZ00018

Synonyms

NCBI ID Ensembl Genomes exon ID
7444007 Thaps3183.1, Thaps3183.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0095

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0207
 0.30

Most Highly Correlated Transcripts

37309

PLN00158
0.9618

37432

PTZ00018
0.9578

33270

PLN00157
0.943

35404

PTZ00018
0.9412

6947

PLN00158
0.9366

37431

PLN00157
0.9309

9992

H15
0.9307

bd950

(bd950) NA
0.929

bd843

(bd843) NA
0.9288

bd951

(bd951) NA
0.9013

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H3 Histone H3; Histone H3. cl00074 181.877 1.31E-59 34 - 135 specific 128705
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 181.877 1.31E-59 34 - 135 superfamily 260174
PTZ00018 histone H3; Provisional - 258.296 2.52E-89 1 - 136 multi-dom 185400

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
27688 PHATRDRAFT_50872 PHATRDRAFT_50872 203578 50352 77317 Cre12.g504800.t1.2 Not available 284752

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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