3206 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3206	chr_3	CAP10 superfamily	390290	392147	-	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441758	Thaps3206.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0135

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0105	0.42	10000 20000

Most Highly Correlated Transcripts

3842 hypothetical protein 0.9487	5051 hypothetical protein 0.9338	4333 hypothetical protein 0.9294	8414 NA 0.9291	21778 hypothetical protein 0.9199	6231 hypothetical protein 0.9176
10050 DUF2233 0.9163	34590 nt_trans superfamily 0.9133	4565 hypothetical protein 0.9079	3161 hypothetical protein 0.9074

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	79.3882	1.12E-16	348 - 559	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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