32485 PLN02681
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32485 chr_2 PLN02681 2106081 2108023 - PLN02681

Synonyms

NCBI ID Ensembl Genomes exon ID
7452507 Thaps32485.1, Thaps32485.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0419

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0198
 0.40

Most Highly Correlated Transcripts

bd1934

(bd1934) NA
0.8887

bd1813

(bd1813) NA
0.8809

35350

PKc_like superfamily
0.8538

bd690

(bd690) NA
0.8536

bd410

(bd410) HNHc
0.8458

4000

hypothetical protein
0.8409

32067

PTZ00182
0.8405

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8401

5509

Pkinase
0.8348

264670

Thioredoxin_like superfamily
0.8326

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pro_dh superfamily Proline dehydrogenase; Proline dehydrogenase. - 199.522 2.62E-58 373 - 594 superfamily 250750
PLN02681 proline dehydrogenase - 585.898 0 61 - 615 multi-dom 215366

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_1155 PHATR_1155 268766 257415 471457 Cre01.g036850.t1.2 AT5G38710.1 345580

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0005509 GO:0004657 GO:0006537 GO:0006562 GO:0004154 GO:0016647 GO:0019116 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0004657

proline dehydrogenase activity

Details: 
Catalysis of the reaction: L-proline + acceptor = (S)-1-pyrroline-5-carboxylate + reduced acceptor.
GO Category: 
MF

GO:0006537

glutamate biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
GO Category: 
BP

GO:0006562

proline catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
GO Category: 
BP

GO:0004154

dihydropterin oxidase activity

Details: 
Catalysis of the reaction: a 7,8-dihydropteridine + O2 = a pterin + hydrogen peroxide.
GO Category: 
MF

GO:0016647

oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces oxygen.
GO Category: 
MF

GO:0019116

hydroxy-nicotine oxidase activity

Details: 
Catalysis of the reaction: 6-hydroxynicotine + H2O + O2 = 1-(6-hydroxypyrid-3-yl)-4-(methylamino)butan-1-one + hydrogen peroxide.
GO Category: 
MF

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